PDBsum entry 6j0c

Pore analysis for: 6j0c calculated with

MOLE 2.0

PDB id

6j0c

Pores calculated on whole structure

Pores calculated excluding ligands

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17 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.75

1.78

25.5

-0.70

-0.50

9.2

82

1

1

4

3

0

1

0

2

1.10

2.53

44.0

-1.41

-0.35

14.7

81

4

3

5

1

4

1

0

3

1.72

1.72

51.8

-1.38

-0.71

9.4

82

2

2

5

2

0

1

0

4

1.25

1.40

53.5

-0.17

0.00

4.5

81

0

1

4

4

3

0

0

5

1.72

1.76

54.8

-1.35

-0.67

11.1

83

2

2

5

3

0

1

0

6

1.30

2.86

125.8

-1.63

-0.47

17.7

90

4

6

9

3

3

0

0

7

1.28

2.86

157.6

-0.57

-0.20

11.8

87

2

7

10

8

5

0

0

8

1.28

2.86

158.5

-0.60

-0.21

12.1

87

2

7

10

8

5

0

0

9

1.35

2.93

178.6

-1.50

-0.41

17.2

84

7

12

10

5

6

1

0

10

1.30

2.90

192.9

-1.62

-0.51

14.0

89

5

7

17

5

4

1

0

11

1.35

2.42

220.4

-1.18

-0.41

12.7

86

12

10

21

8

9

2

0

12

2.35

2.88

246.3

-1.11

-0.34

16.0

85

14

19

19

12

12

2

0

13

1.31

1.33

273.3

-1.35

-0.43

15.7

86

15

16

24

11

10

3

0

14

1.25

2.42

274.7

-1.08

-0.34

15.1

84

18

21

19

13

15

2

0

15

1.28

2.30

263.2

-1.03

-0.33

14.0

86

11

13

18

11

10

1

0

16

1.43

2.88

297.9

-1.27

-0.37

16.7

85

12

19

20

12

11

2

0

17

1.24

2.39

325.1

-1.29

-0.39

16.0

84

16

22

21

12

14

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.