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PDBsum entry 6fb5

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6fb5 calculated with MOLE 2.0 PDB id
6fb5
Pores calculated on whole structure Pores calculated excluding ligands

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1 pore, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.40 1.69 40.7 -1.21 -0.17 10.3 87 4 0 6 3 2 0 0  DA 503 D DG 504 D DA 505 D DC 506 D DT 507 D DT
508 D DG 509 D DT 510 D DT 612 F DG 613 F DG 614
F DA 615 F DA 617 F DA 618 F DA 624 F
2 1.28 1.34 91.3 -1.34 -0.53 15.3 79 6 1 3 3 1 0 0  MG 202 A DC 512 D DA 513 D DC 514 D DA 515 D DG
519 D DT 520 D PGO 601 D DG 611 F DT 612 F DG 613
F DG 614 F DA 615 F DC 616 F DA 617 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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