spacer
spacer

PDBsum entry 6fb5

Go to PDB code: 
Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6fb5 calculated with MOLE 2.0 PDB id
6fb5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.76 18.8 -0.71 -0.39 15.8 97 2 0 2 2 0 0 0  DC 512 D DC 514 D DT 607 F DC 609 F DT 610 F
2 1.26 1.73 21.3 -0.69 -0.30 14.3 91 2 0 2 2 1 0 0  DC 512 D DC 514 D DT 607 F DC 609 F DT 610 F
3 1.22 1.64 21.0 0.76 0.46 10.7 69 1 2 1 4 4 0 0  ACT 203 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer