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PDBsum entry 6h7y

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protein ligands metals links
Hydrolase PDB id
6h7y

 

 

 

 

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JSmol PyMol  
Contents
Protein chain
696 a.a.
Ligands
NAG-NAG ×2
NAG-NAG-BMA-MAN
NAG-NAG-BMA-MAN-
MAN
NAG ×3
EDO ×6
TAM ×2
PEG ×3
PGE
FVZ
Metals
_CL ×2
_ZN ×2
_CA
Waters ×427
PDB id:
6h7y
Name: Hydrolase
Title: X-ray structure of human glutamate carboxypeptidase ii (gcpii) in complex with a inhibitor RNA 1-79-1
Structure: Glutamate carboxypeptidase 2. Chain: a. Synonym: cell growth-inhibiting gene 27 protein,folate hydrolase 1, folylpoly-gamma-glutamate carboxypeptidase,fgcp,glutamate carboxypeptidase ii,gcpii,membrane glutamate carboxypeptidase,mgcp,n- acetylated-alpha-linked acidic dipeptidase i,naaladase i,prostate- specific membrane antigen,psma,pteroylpoly-gamma-glutamate carboxypeptidase. Engineered: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: folh1, folh, naalad1, psm, psma, gig27. Expressed in: drosophila melanogaster. Expression_system_taxid: 7227. Expression_system_variant: schneiders s2 cells.
Resolution:
1.81Å     R-factor:   0.150     R-free:   0.178
Authors: L.Motlova,Z.Novakova,C.Barinka
Key ref: R.Nakajima et al. (2018). 2-Aminoadipic Acid-C(O)-Glutamate Based Prostate-Specific Membrane Antigen Ligands for Potential Use as Theranostics. ACS Med Chem Lett, 9, 1099-1104. PubMed id: 30429952
Date:
31-Jul-18     Release date:   05-Dec-18    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q04609  (FOLH1_HUMAN) -  Glutamate carboxypeptidase 2 from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
750 a.a.
696 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: E.C.3.4.17.21  - glutamate carboxypeptidase Ii.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction: Release of an unsubstituted, C-terminal glutamyl residue, typically from Ac-Asp-Glu or folylpoly-gamma-glutamates.
      Cofactor: Zn(2+)

 

 
ACS Med Chem Lett 9:1099-1104 (2018)
PubMed id: 30429952  
 
 
2-Aminoadipic Acid-C(O)-Glutamate Based Prostate-Specific Membrane Antigen Ligands for Potential Use as Theranostics.
R.Nakajima, Z.Nováková, W.Tueckmantel, L.Motlová, C.Baƙinka, A.P.Kozikowski.
 
  ABSTRACT  
 
The design and synthesis of prostate specific membrane antigen (PSMA) ligands derived from 2-aminoadipic acid, a building block that has not previously been used to construct PSMA ligands, are reported. The effects of both the linker length and of an N-substituent of our PSMA ligands were probed, and X-ray structures of five of these ligands bound to PSMA were obtained. Among the ligands disclosed herein, 13b showed the highest inhibitory activity for PSMA. As ligand 13b can readily be radiolabeled since its fluorine atom is adjacent to the nitrogen atom of its pyridine ring, the use of this and related compounds as theranostics can be pursued.
 

 

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