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PDBsum entry 5ugp
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Tunnel analysis for: 5ugp calculated with  MOLE 2.0
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PDB id
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5ugp
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.47 |
1.47 |
20.0 |
-1.25 |
0.23 |
18.6 |
86 |
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3 |
1 |
2 |
1 |
1 |
0 |
0 |
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8CP 401 A DC 10 P DG 6 T DG 7 T DC 8 T
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2 |
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1.44 |
1.44 |
27.8 |
-2.86 |
-0.70 |
32.3 |
90 |
3 |
4 |
3 |
1 |
1 |
0 |
0 |
8CP 401 A MG 403 A DC 10 P DG 6 T
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3 |
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1.50 |
1.50 |
28.3 |
-2.58 |
-0.73 |
26.4 |
83 |
2 |
5 |
2 |
0 |
2 |
0 |
0 |
8CP 401 A MG 403 A DC 10 P DG 6 T
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4 |
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1.43 |
1.43 |
36.3 |
-2.21 |
-0.33 |
25.9 |
84 |
4 |
2 |
3 |
2 |
1 |
1 |
0 |
8CP 401 A DG 4 D DC 10 P DG 6 T
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5 |
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1.47 |
2.55 |
43.0 |
-2.11 |
-0.59 |
24.3 |
83 |
3 |
2 |
2 |
1 |
1 |
0 |
0 |
8CP 401 A DC 3 D DG 4 D DG 5 D DC 10 P DG 3 T DA
4 T DC 5 T DG 6 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program