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PDBsum entry 5ugo
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Tunnel analysis for: 5ugo calculated with  MOLE 2.0
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PDB id
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5ugo
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.37 |
1.51 |
28.9 |
-1.54 |
-0.64 |
20.1 |
89 |
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3 |
5 |
2 |
3 |
1 |
0 |
0 |
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2PN 401 A CA 402 A DC 11 P
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2 |
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1.36 |
1.51 |
29.7 |
-1.93 |
-0.63 |
23.6 |
88 |
3 |
5 |
2 |
2 |
1 |
0 |
0 |
2PN 401 A CA 402 A DC 10 P DC 11 P
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3 |
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1.36 |
1.51 |
42.3 |
-1.01 |
-0.27 |
19.4 |
84 |
5 |
3 |
1 |
3 |
2 |
0 |
0 |
2PN 401 A CA 402 A DT 6 P DC 8 P DG 9 P DC 10 P
DC 11 P DC 8 T
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4 |
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1.37 |
1.51 |
52.3 |
-1.80 |
-0.39 |
22.7 |
83 |
6 |
4 |
3 |
4 |
2 |
1 |
0 |
2PN 401 A CA 402 A DG 4 D DC 10 P DC 11 P DG 6 T
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5 |
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1.40 |
1.56 |
68.3 |
-1.36 |
-0.51 |
18.0 |
83 |
7 |
4 |
2 |
3 |
2 |
0 |
0 |
2PN 401 A CA 402 A DC 3 D DG 4 D DG 5 D DC 10 P
DC 11 P DA 4 T DC 5 T DG 6 T DG 7 T DC 8 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program