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PDBsum entry 5u9h
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Tunnel analysis for: 5u9h calculated with  MOLE 2.0
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PDB id
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5u9h
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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5 tunnels,
coloured by tunnel radius |
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4 tunnels,
coloured by
tunnel radius
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4 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.20 |
23.9 |
-0.97 |
-0.41 |
17.2 |
76 |
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1 |
1 |
0 |
2 |
1 |
1 |
0 |
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DG 1 D DT 2 D DC 3 D DG 4 D DA 4 T DC 5 T MN 101 T
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2 |
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1.20 |
1.21 |
30.9 |
-0.60 |
-0.12 |
12.5 |
89 |
2 |
0 |
1 |
3 |
1 |
0 |
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DG 1 D DT 2 D DT 6 P DC 5 T DG 6 T DG 7 T DC 8 T
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3 |
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1.21 |
1.20 |
48.7 |
-1.96 |
-0.37 |
22.6 |
84 |
5 |
3 |
2 |
3 |
2 |
0 |
0 |
PPV 401 A DG 1 D DT 2 D DC 10 P C7R 11 P DG 6 T
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4 |
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2.06 |
2.12 |
18.6 |
-1.40 |
-0.49 |
14.4 |
96 |
2 |
0 |
2 |
2 |
0 |
0 |
0 |
DG 7 P DC 8 P DG 9 P DG 9 T DC 10 T DT 12 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program