PDBsum entry 5u3c Go to PDB code:  Pore analysis for: 5u3c calculated with MOLE 2.0 PDB id 5u3c Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.81 1.97 29.5 -1.10 -0.28 23.0 85 3 3 1 4 1 1 0  ADP 602 C 2 1.24 1.46 55.4 1.28 0.38 9.3 84 4 2 2 12 0 0 0  ADP 602 C 3 1.25 1.21 81.5 -0.78 -0.16 22.2 81 6 7 2 8 2 0 0  ADP 602 B 4 1.26 1.36 91.2 -0.81 -0.29 20.4 82 7 8 2 9 2 2 0  ADP 602 B 5 1.31 2.84 105.0 -1.19 -0.02 22.5 83 10 5 5 12 4 0 0   6 3.48 3.74 108.3 -2.25 -0.39 28.3 83 12 8 6 5 2 1 0  CTP 601 A ADP 602 A 7 1.24 1.28 134.4 -0.32 -0.11 15.9 82 7 9 5 14 5 2 0  ADP 602 D 8 1.45 1.45 144.5 -2.29 -0.53 26.4 84 12 10 9 4 2 1 0  CTP 601 A ADP 602 A 9 1.23 1.27 153.5 -1.41 -0.34 25.8 82 11 12 4 10 4 0 0  ADP 602 B 10 1.30 1.29 157.2 -0.41 -0.01 17.0 82 13 18 10 17 7 3 0  CTP 601 C ADP 602 C CTP 601 D ADP 602 D 11 1.41 1.49 159.3 -0.56 -0.18 18.6 81 10 12 4 15 7 2 0  ADP 602 D 12 1.19 1.26 201.1 -0.89 -0.19 17.8 79 17 12 8 16 7 5 0  CTP 601 D ADP 602 D 13 1.82 2.12 202.6 -1.08 -0.24 22.5 81 15 22 9 19 4 3 0  CTP 601 C ADP 602 C CTP 601 D 14 1.21 1.35 225.9 -1.39 -0.33 21.1 80 15 11 8 11 4 5 0  CTP 601 C ADP 602 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.