PDBsum entry 5u3c Go to PDB code:  Tunnel analysis for: 5u3c calculated with MOLE 2.0 PDB id 5u3c Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 2.76 56.2 -0.76 0.02 21.8 78 6 5 2 8 1 5 0  CTP 601 D 2 1.22 2.77 56.7 -0.75 0.04 21.8 78 6 5 3 8 1 5 0  CTP 601 B 3 1.23 3.31 63.0 -0.61 0.01 21.0 77 7 6 3 11 1 5 0  CTP 601 A 4 1.19 2.67 69.8 -0.92 -0.09 22.8 81 8 7 6 11 1 4 0  CTP 601 C 5 1.30 1.30 16.9 -1.14 -0.46 19.4 73 4 2 1 1 2 0 0   6 1.27 2.12 17.4 -0.49 -0.24 14.8 73 3 1 1 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.