spacer
spacer

PDBsum entry 5tl7

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 5tl7 calculated with MOLE 2.0 PDB id
5tl7
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 2.09 25.6 -2.23 -0.95 19.4 93 1 3 5 0 0 0 0  
2 1.71 1.82 38.2 -2.15 -0.67 14.8 87 3 3 7 1 1 0 0  
3 1.41 1.59 41.5 -1.85 -0.45 25.8 81 3 4 2 4 1 1 0  
4 1.37 2.10 47.0 -2.40 -0.79 18.0 90 3 5 8 0 1 0 0  
5 1.38 3.71 61.2 -2.02 -0.55 30.3 84 5 9 3 4 1 0 0  
6 1.39 1.59 71.5 -1.51 -0.46 25.5 75 6 8 2 5 2 1 0  
7 2.49 2.50 36.6 -0.60 -0.25 12.1 79 3 1 1 3 1 2 0  
8 1.26 3.01 77.0 -2.44 -0.74 28.6 88 5 6 2 2 0 0 0  
9 1.20 1.20 116.1 -1.73 -0.49 25.4 80 5 14 4 9 3 1 0  
10 1.20 1.20 141.0 -1.71 -0.46 24.3 79 8 11 3 9 3 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer