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PDBsum entry 5kjc
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Tunnel analysis for: 5kjc calculated with  MOLE 2.0
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PDB id
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5kjc
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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8 tunnels,
coloured by
tunnel radius
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8 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.15 |
1.45 |
29.5 |
1.32 |
0.20 |
3.8 |
90 |
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0 |
1 |
4 |
10 |
1 |
0 |
0 |
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NAJ 377 B PFB 378 B
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2 |
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1.14 |
1.44 |
31.9 |
1.37 |
0.19 |
3.5 |
91 |
0 |
1 |
4 |
11 |
1 |
0 |
0 |
NAJ 377 B PFB 378 B
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3 |
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1.16 |
1.45 |
34.6 |
0.28 |
-0.14 |
9.1 |
93 |
2 |
1 |
2 |
8 |
1 |
0 |
1 |
NAJ 377 B PFB 378 B
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4 |
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1.14 |
1.44 |
37.0 |
0.42 |
-0.12 |
8.1 |
93 |
2 |
1 |
2 |
9 |
1 |
0 |
1 |
NAJ 377 B PFB 378 B
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5 |
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1.16 |
1.45 |
35.0 |
1.20 |
0.16 |
4.1 |
90 |
0 |
2 |
5 |
11 |
1 |
0 |
0 |
NAJ 377 A PFB 378 A
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6 |
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1.15 |
1.44 |
37.0 |
0.39 |
-0.14 |
8.7 |
93 |
2 |
1 |
2 |
9 |
1 |
0 |
1 |
NAJ 377 A PFB 378 A
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7 |
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1.22 |
1.22 |
20.7 |
-0.80 |
-0.35 |
15.5 |
88 |
3 |
1 |
1 |
4 |
1 |
0 |
0 |
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8 |
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1.22 |
1.22 |
22.2 |
-0.60 |
-0.35 |
13.8 |
88 |
3 |
1 |
1 |
4 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program