 |
PDBsum entry 5jwc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5jwc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5jwc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 pores,
coloured by radius |
|
17 pores,
coloured by radius
|
17 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.71 |
1.82 |
29.0 |
-1.88 |
-0.34 |
30.0 |
79 |
|
4 |
2 |
1 |
2 |
0 |
0 |
0 |
|
|
 |
|
2 |
 |
2.23 |
2.26 |
32.6 |
-0.85 |
-0.32 |
5.3 |
75 |
2 |
0 |
2 |
3 |
2 |
2 |
0 |
FAD 601 A TRT 608 A
|
|
3 |
 |
2.24 |
2.49 |
39.2 |
-0.09 |
0.03 |
4.1 |
72 |
1 |
0 |
3 |
5 |
3 |
2 |
0 |
FAD 601 A TRT 608 A
|
|
4 |
 |
1.52 |
2.93 |
41.1 |
-1.09 |
-0.04 |
12.1 |
68 |
4 |
2 |
0 |
2 |
4 |
3 |
1 |
FAD 601 H 4W0 609 H
|
|
5 |
 |
2.29 |
2.44 |
50.7 |
-0.47 |
-0.24 |
3.2 |
82 |
1 |
0 |
6 |
6 |
2 |
3 |
0 |
FAD 601 A TRT 608 A
|
|
6 |
 |
2.10 |
2.52 |
58.7 |
-1.09 |
-0.17 |
12.9 |
74 |
5 |
0 |
4 |
4 |
3 |
3 |
0 |
FAD 601 H TRT 606 H TRT 608 H
|
|
7 |
 |
2.51 |
3.94 |
65.3 |
-1.77 |
-0.29 |
26.4 |
74 |
10 |
6 |
0 |
2 |
3 |
3 |
0 |
4W0 610 A FAD 601 H MG 605 H
|
|
8 |
 |
1.51 |
2.91 |
65.8 |
-1.25 |
-0.01 |
15.4 |
68 |
5 |
2 |
4 |
4 |
6 |
2 |
1 |
FAD 601 H TRT 606 H TRT 608 H 4W0 609 H
|
|
9 |
 |
1.20 |
1.40 |
67.9 |
-1.64 |
-0.20 |
25.8 |
79 |
11 |
4 |
3 |
5 |
2 |
1 |
0 |
4W0 609 A 4W0 610 A
|
|
10 |
 |
1.75 |
1.77 |
77.0 |
-2.39 |
-0.12 |
37.2 |
77 |
12 |
7 |
0 |
3 |
2 |
0 |
0 |
|
|
11 |
 |
2.62 |
3.49 |
89.2 |
-1.59 |
-0.33 |
20.7 |
80 |
8 |
6 |
4 |
4 |
3 |
3 |
0 |
FAD 601 A MG 605 A 4W0 609 A
|
|
12 |
|
1.63 |
1.62 |
93.6 |
-2.34 |
-0.34 |
32.0 |
75 |
12 |
8 |
0 |
3 |
3 |
3 |
0 |
4W0 610 A FAD 601 H MG 605 H
|
|
13 |
|
2.22 |
2.26 |
94.4 |
-1.91 |
-0.37 |
24.6 |
75 |
10 |
6 |
1 |
2 |
4 |
3 |
0 |
FAD 601 A MG 605 A 4W0 609 A
|
|
14 |
|
1.89 |
1.85 |
96.2 |
-2.32 |
-0.27 |
33.7 |
77 |
12 |
9 |
0 |
4 |
3 |
1 |
0 |
FAD 601 A MG 605 A 4W0 609 A
|
|
15 |
|
2.32 |
2.47 |
100.4 |
-1.92 |
-0.37 |
25.3 |
76 |
11 |
8 |
2 |
6 |
4 |
3 |
0 |
FAD 601 A MG 605 A TRT 608 A 4W0 609 A
|
|
16 |
|
1.38 |
1.45 |
105.2 |
-1.41 |
-0.34 |
19.8 |
78 |
11 |
6 |
5 |
9 |
4 |
4 |
0 |
FAD 601 A MG 605 A TRT 608 A 4W0 609 A 4W0 610 A
|
 |
17 |
|
1.28 |
2.11 |
144.5 |
-1.76 |
-0.29 |
20.8 |
75 |
15 |
8 |
5 |
5 |
6 |
3 |
0 |
FAD 601 A MG 605 A TRT 606 A TRT 608 A 4W0 609 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program