 |
PDBsum entry 5jwc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5jwc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5jwc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.35 |
2.29 |
30.6 |
-0.31 |
0.14 |
19.6 |
86 |
|
6 |
3 |
3 |
7 |
1 |
0 |
0 |
|
4W0 609 A 4W0 610 A
|
 |
|
2 |
 |
1.34 |
2.30 |
30.8 |
-0.23 |
0.15 |
18.9 |
86 |
6 |
4 |
3 |
7 |
1 |
0 |
0 |
4W0 609 A 4W0 610 A
|
|
3 |
 |
1.15 |
1.50 |
43.9 |
-1.14 |
-0.04 |
16.5 |
90 |
6 |
2 |
5 |
5 |
2 |
1 |
0 |
4W0 609 A 4W0 610 A
|
 |
4 |
 |
1.12 |
1.41 |
46.2 |
-0.67 |
0.12 |
13.8 |
87 |
6 |
1 |
7 |
5 |
4 |
1 |
0 |
4W0 609 A 4W0 610 A TRT 607 H
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program