PDBsum entry 5ji2 Go to PDB code:  Tunnel analysis for: 5ji2 calculated with MOLE 2.0 PDB id 5ji2 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.07 1.07 39.1 1.39 0.53 7.8 84 1 2 2 13 2 0 0   2 1.19 1.35 52.6 -0.36 0.16 19.7 84 7 4 1 9 2 0 0  ADP 501 E 3 1.14 1.28 57.5 0.13 0.34 13.1 87 2 3 5 12 2 0 0   4 1.21 1.38 57.8 0.66 0.35 12.9 86 3 4 2 13 2 0 0  ADP 501 E 5 1.23 2.69 83.9 -0.78 -0.09 16.1 82 7 5 3 11 4 2 0  ADP 501 E 6 1.30 1.33 16.9 3.28 1.06 0.5 78 0 0 1 8 0 0 0   7 1.28 1.74 15.6 -1.45 -0.41 24.5 97 1 1 2 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.