PDBsum entry 5j3v Go to PDB code:  Pore analysis for: 5j3v calculated with MOLE 2.0 PDB id 5j3v Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   20 pores, coloured by radius 20 pores, coloured by radius 20 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.52 30.0 -1.37 -0.30 19.0 78 2 4 3 4 2 0 0   2 1.16 1.81 32.2 -0.90 0.26 17.8 72 3 1 2 5 3 0 0   3 1.32 2.93 34.4 -1.57 0.01 26.9 81 4 3 1 8 3 0 0   4 1.16 1.89 36.4 -1.03 -0.20 17.0 84 3 3 5 4 1 0 0   5 1.56 3.59 38.6 -1.55 -0.28 24.6 85 4 5 4 6 2 0 0   6 3.14 3.48 39.7 -1.74 -0.56 16.6 90 3 1 9 1 1 1 0   7 1.26 1.43 85.4 0.05 0.05 6.9 78 2 1 6 7 1 3 0   8 1.74 1.94 110.5 -1.26 -0.30 16.9 82 7 6 8 5 2 3 0   9 1.17 1.35 112.1 -0.53 0.02 16.6 78 5 7 6 8 3 3 0   10 2.02 2.16 122.6 -1.79 -0.39 22.0 80 7 10 9 5 3 4 0   11 1.17 1.16 142.0 -0.86 -0.17 19.2 81 11 9 7 10 1 3 0   12 1.14 2.91 142.1 -1.36 -0.19 17.4 83 11 6 10 8 5 2 0   13 1.22 3.00 145.8 -1.66 -0.23 21.8 81 11 8 11 7 5 3 0   14 1.19 1.35 146.7 -0.84 0.06 17.6 80 9 7 8 11 6 2 0   15 1.17 1.33 180.6 -0.53 -0.08 12.6 76 4 8 11 13 6 4 0   16 1.24 1.52 58.1 -1.11 -0.26 22.1 80 7 5 2 6 2 2 0   17 1.97 1.96 65.9 -1.76 -0.33 27.0 80 8 6 1 6 3 0 0   18 1.09 1.53 25.4 2.28 0.89 0.9 77 0 0 4 7 3 0 0   19 1.10 1.52 28.8 2.52 0.91 0.8 74 0 0 4 9 3 0 0   20 1.13 2.82 30.7 2.37 0.96 3.9 70 1 1 3 8 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.