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PDBsum entry 5iyd
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Transcription, transferase/DNA/RNA
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PDB id
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5iyd
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Contents |
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1454 a.a.
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1165 a.a.
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275 a.a.
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129 a.a.
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210 a.a.
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86 a.a.
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171 a.a.
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150 a.a.
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125 a.a.
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67 a.a.
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117 a.a.
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46 a.a.
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310 a.a.
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113 a.a.
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99 a.a.
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185 a.a.
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180 a.a.
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165 a.a.
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138 a.a.
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222 a.a.
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Generate full PROCHECK analyses
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PROCHECK summary for 5iyd
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 3987 82.8%*
Additional allowed regions [a,b,l,p] 659 13.7%
Generously allowed regions [~a,~b,~l,~p] 105 2.2%
Disallowed regions [XX] 63 1.3%*
---- ------
Non-glycine and non-proline residues 4814 100.0%
End-residues (excl. Gly and Pro) 43
Glycine residues 305
Proline residues 245
----
Total number of residues 5407
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -0.40
Chi1-chi2 distribution -0.14
Chi1 only -0.04
Chi3 & chi4 0.50
Omega -0.52*
-0.25
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.56
Main-chain bond angles 0.27
0.39
=====
OVERALL AVERAGE 0.00
=====
G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
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