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PDBsum entry 5iyd
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Tunnel analysis for: 5iyd calculated with  MOLE 2.0
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PDB id
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5iyd
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.17 |
1.30 |
15.1 |
-1.00 |
0.14 |
30.6 |
86 |
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3 |
2 |
0 |
2 |
1 |
0 |
0 |
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2 |
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1.79 |
2.58 |
15.5 |
0.11 |
0.36 |
21.4 |
77 |
2 |
3 |
1 |
4 |
1 |
0 |
0 |
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3 |
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2.20 |
2.20 |
16.6 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
DG 75 X DC 76 X DC 77 X DA 20 Y DC 21 Y DG 22 Y
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4 |
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2.09 |
2.09 |
17.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
DG 75 X DC 76 X DC 77 X DA 20 Y DC 21 Y DG 22 Y
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5 |
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1.10 |
3.32 |
28.7 |
2.18 |
1.15 |
5.1 |
77 |
2 |
0 |
1 |
7 |
4 |
0 |
0 |
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6 |
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1.24 |
1.47 |
16.7 |
0.34 |
-0.09 |
11.3 |
91 |
2 |
2 |
0 |
5 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program