PDBsum entry 5ikq

Pore analysis for: 5ikq calculated with

MOLE 2.0

PDB id

5ikq

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.12

1.13

30.5

-0.71

-0.22

11.7

73

2

3

2

3

2

2

1

2

1.15

1.35

34.0

-1.22

-0.34

11.6

80

1

3

3

2

2

2

0

3

1.15

1.14

48.3

-1.55

-0.32

18.6

76

7

3

2

2

2

3

0

4

1.18

1.18

51.1

-0.78

-0.27

11.0

81

4

3

4

4

3

3

0

5

1.33

1.54

65.0

-0.46

-0.14

8.4

74

4

2

6

6

4

3

2

NAG 1 D

6

1.13

1.35

95.1

-1.06

-0.08

15.2

79

8

2

5

9

4

4

0

7

2.05

2.07

97.9

-1.25

-0.06

14.6

77

8

2

7

7

4

4

2

8

1.18

1.42

117.9

-0.55

-0.10

12.9

79

8

6

6

11

5

3

0

COH 601 B NAG 1 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.