PDBsum entry 5gpk Go to PDB code:  Pore analysis for: 5gpk calculated with MOLE 2.0 PDB id 5gpk Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.37 34.5 -1.65 -0.44 17.7 78 1 6 3 1 3 1 0   2 1.37 1.37 44.6 -1.55 -0.32 16.7 75 6 3 5 0 3 1 0   3 1.15 2.29 50.2 -2.27 -0.59 21.6 77 5 7 5 2 3 1 0   4 2.15 2.11 53.9 -2.93 -0.77 31.1 82 8 6 5 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.