PDBsum entry 5gpk Go to PDB code:  Tunnel analysis for: 5gpk calculated with MOLE 2.0 PDB id 5gpk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 1.75 25.7 -1.22 -0.01 18.1 73 3 2 1 4 4 1 0   2 1.59 1.73 27.7 -1.50 -0.31 26.1 72 5 2 1 3 1 0 0   3 1.58 1.75 36.1 -1.22 -0.24 25.1 75 2 6 1 4 3 1 0   4 1.31 1.39 39.7 -0.99 -0.17 12.9 74 3 4 4 3 3 1 0   5 1.60 2.58 49.4 -1.65 -0.36 19.4 72 4 6 5 4 6 2 0   6 1.59 2.56 52.8 -1.95 -0.42 25.8 77 6 7 4 4 3 1 0  MSE 117 B 7 1.59 1.74 52.3 -2.36 -0.65 27.0 78 6 6 5 4 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.