PDBsum entry 5gmf Go to PDB code:  Pore analysis for: 5gmf calculated with MOLE 2.0 PDB id 5gmf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 3.55 27.3 -1.45 -0.05 15.4 75 3 3 3 1 6 1 0   2 1.91 1.94 50.9 -2.49 -0.71 25.5 92 7 8 15 2 1 0 0  NAG 903 B NAG 904 D 3 1.64 1.85 78.7 -1.05 -0.16 8.9 83 3 2 6 1 6 2 0  NAG 1 M NAG 2 M 4 1.64 1.86 133.8 -0.85 -0.38 9.9 87 4 3 10 5 3 1 1  NAG 904 D U 3 E NAG 1 N NAG 2 N 5 1.71 1.88 151.2 -1.72 -0.39 15.6 84 14 3 15 4 6 1 0  NAG 908 A 6 1.31 4.05 184.1 -1.61 -0.42 18.2 87 11 7 20 5 6 1 0  NAG 909 B NAG 904 D U 3 F 7 1.09 1.02 228.7 -1.84 -0.45 18.3 88 23 6 20 5 4 0 0  NAG 908 A NAG 906 C NAG 910 C U 1 H U 3 H 8 1.84 2.00 37.1 -1.49 -0.55 18.3 82 4 2 0 2 1 2 0   9 1.83 1.97 25.5 -1.55 -0.55 20.1 82 3 2 0 2 1 1 0   10 1.79 1.87 32.3 -1.42 -0.65 21.1 85 2 3 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.