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PDBsum entry 5ftt

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protein ligands metals Protein-protein interface(s) links
Signaling protein PDB id
5ftt

 

 

 

 

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Contents
Protein chains
262 a.a.
326 a.a.
365 a.a.
263 a.a.
Ligands
NAG ×8
Metals
_CA ×4
_NA ×4
PDB id:
5ftt
Name: Signaling protein
Title: Octameric complex of latrophilin 3 (lec, olf) , unc5d (ig, ig2, tsp1) and flrt2 (lrr)
Structure: Netrin receptor unc5d. Chain: a, e. Fragment: ig1 ig2 tsp1. Synonym: protein unc-5 homolog d, unc5d. Engineered: yes. Leucine-rich repeat transmembrane protein flrt2. Chain: b, f. Fragment: leucine-rich repeat domain. Synonym: fibronectin leucine rich transmembrane protein 2, flrt2.
Source: Rattus norvegicus. Norway rat. Organism_taxid: 10116. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293. Mus musculus. House mouse. Organism_taxid: 10090.
Resolution:
3.40Å     R-factor:   0.226     R-free:   0.245
Authors: V.A.Jackson,S.Mehmood,M.Chavent,P.Roversi,M.Carrasquero,D.Del Toro, G.Seyit-Bremer,F.M.Ranaivoson,D.Comoletti,M.S.P.Sansom,C.V.Robinson, R.Klein,E.Seiradake
Key ref: V.A.Jackson et al. (2016). Super-complexes of adhesion GPCRs and neural guidance receptors. Nat Commun, 7, 11184. PubMed id: 27091502 DOI: 10.1038/ncomms11184
Date:
15-Jan-16     Release date:   04-May-16    
PROCHECK
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 Headers
 References

Protein chains
Pfam   ArchSchema ?
F1LW30  (UNC5D_RAT) -  Netrin receptor UNC5D from Rattus norvegicus
Seq:
Struc:
 
Seq:
Struc:
956 a.a.
262 a.a.
Protein chains
Pfam   ArchSchema ?
Q8BLU0  (FLRT2_MOUSE) -  Leucine-rich repeat transmembrane protein FLRT2 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
660 a.a.
326 a.a.
Protein chains
Pfam   ArchSchema ?
Q80TS3  (AGRL3_MOUSE) -  Adhesion G protein-coupled receptor L3 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1537 a.a.
365 a.a.*
Protein chains
Pfam   ArchSchema ?
Q80TS3  (AGRL3_MOUSE) -  Adhesion G protein-coupled receptor L3 from Mus musculus
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1537 a.a.
263 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 2 residue positions (black crosses)

 

 
DOI no: 10.1038/ncomms11184 Nat Commun 7:11184 (2016)
PubMed id: 27091502  
 
 
Super-complexes of adhesion GPCRs and neural guidance receptors.
V.A.Jackson, S.Mehmood, M.Chavent, P.Roversi, M.Carrasquero, D.Del Toro, G.Seyit-Bremer, F.M.Ranaivoson, D.Comoletti, M.S.Sansom, C.V.Robinson, R.Klein, E.Seiradake.
 
  ABSTRACT  
 
Latrophilin adhesion-GPCRs (Lphn1-3 or ADGRL1-3) and Unc5 cell guidance receptors (Unc5A-D) interact with FLRT proteins (FLRT1-3), thereby promoting cell adhesion and repulsion, respectively. How the three proteins interact and function simultaneously is poorly understood. We show that Unc5D interacts with FLRT2 in cis, controlling cell adhesion in response to externally presented Lphn3. The ectodomains of the three proteins bind cooperatively. Crystal structures of the ternary complex formed by the extracellular domains reveal that Lphn3 dimerizes when bound to FLRT2:Unc5, resulting in a stoichiometry of 1:1:2 (FLRT2:Unc5D:Lphn3). This 1:1:2 complex further dimerizes to form a larger 'super-complex' (2:2:4), using a previously undescribed binding motif in the Unc5D TSP1 domain. Molecular dynamics simulations, point-directed mutagenesis and mass spectrometry demonstrate the stability and molecular properties of these complexes. Our data exemplify how receptors increase their functional repertoire by forming different context-dependent higher-order complexes.
 

 

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