PDBsum entry 5fmf Go to PDB code:  Pore analysis for: 5fmf calculated with MOLE 2.0 PDB id 5fmf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 40 pores, coloured by radius 40 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.13 2.30 25.5 -1.36 -0.47 19.5 86 2 2 2 3 0 0 0   2 1.58 1.58 41.1 -1.57 -0.85 16.8 80 1 5 3 2 0 1 0   3 1.81 3.94 61.1 -1.13 0.00 19.1 81 8 5 8 9 5 1 0   4 2.01 2.01 71.3 -1.82 -0.48 20.6 85 7 5 8 4 3 1 0   5 3.12 3.32 80.7 0.08 -0.32 8.5 78 4 2 1 7 0 0 0  DT 36 N DA 37 N DT 38 N DC 39 N DT 40 N DA 41 N DT 42 N DC 50 N DG 120 T DA 132 T DT 133 T 6 1.78 2.09 85.7 0.00 -0.23 11.2 79 6 1 3 8 0 0 0  DT 38 N DC 39 N DT 40 N DA 41 N DT 42 N DC 50 N DG 120 T 7 2.42 2.42 92.2 -1.89 -0.59 21.5 84 7 6 5 4 1 0 0  DT 30 N DC 31 N DA 32 N DA 33 N DC 131 T DA 132 T DT 133 T 8 1.29 1.50 98.0 -1.20 -0.23 19.2 80 12 6 5 11 4 3 0   9 1.81 2.87 100.2 -2.17 -0.53 23.7 83 13 11 7 8 2 2 0   10 1.28 1.56 121.0 -0.63 -0.01 14.3 81 9 5 7 11 3 1 0   11 1.90 3.20 121.4 -0.87 -0.16 20.3 78 11 6 3 10 1 1 1   12 1.20 2.66 128.1 -0.55 -0.32 11.4 79 6 6 6 9 5 0 0  DT 36 N DA 37 N DT 38 N DC 39 N DT 40 N DA 41 N D A 132 T DT 133 T 13 2.12 2.34 143.9 -1.58 -0.40 20.0 83 20 3 11 9 4 1 0  DA 41 N DT 42 N DC 50 N DG 120 T 14 1.85 1.82 144.5 -1.01 -0.31 15.9 81 17 3 7 12 5 0 0  DA 41 N DT 42 N DC 50 N DG 120 T 15 1.86 2.93 152.6 -1.43 -0.35 21.0 81 22 7 4 11 3 1 0  DA 41 N DT 42 N DC 50 N DG 120 T 16 1.73 1.79 160.7 -0.67 -0.23 18.3 85 11 10 8 14 3 0 0  DT 42 N DA 43 N DC 50 N DG 120 T 17 1.58 1.51 162.7 -0.67 -0.28 16.8 85 8 12 8 12 4 1 0   18 2.09 2.09 175.5 -1.69 -0.41 22.6 85 20 14 12 15 3 1 0   19 1.32 1.55 183.5 -1.28 -0.13 19.8 78 17 9 8 12 6 5 0   20 1.38 1.58 197.6 -1.53 -0.19 21.3 82 22 10 11 15 7 2 0   21 1.86 3.15 194.6 -1.68 -0.35 23.0 84 28 10 12 14 4 2 0   22 1.75 2.99 195.2 -1.25 -0.27 20.4 83 25 10 7 17 4 1 0   23 1.87 3.34 235.7 -1.92 -0.33 22.0 80 32 12 14 14 10 4 0   24 1.27 2.69 248.9 -1.20 -0.28 18.2 82 24 11 15 18 9 1 1   25 2.09 2.27 254.5 -2.03 -0.41 21.4 82 30 17 22 15 10 4 0   26 1.17 1.21 273.3 -0.22 -0.14 14.7 82 14 14 11 28 4 1 0  DT 38 N DC 39 N DT 40 N DA 41 N DT 42 N DA 43 N DG 120 T 27 1.60 2.27 300.1 -1.41 -0.23 18.3 81 31 14 22 23 12 5 0   28 2.06 2.39 304.2 -1.64 -0.33 19.9 80 33 13 18 16 11 4 0  DA 41 N DT 42 N DC 50 N DG 120 T 29 1.46 1.58 37.9 -1.20 -0.21 18.8 84 3 5 4 4 2 0 0   30 1.46 1.60 42.0 -0.42 -0.16 14.1 86 3 4 3 5 3 0 0   31 1.21 1.99 49.6 -1.04 -0.23 18.5 85 5 4 4 7 1 0 0   32 1.52 2.62 56.7 -1.74 -0.57 18.6 79 8 5 4 5 1 2 0   33 1.21 2.01 61.3 -0.69 -0.24 15.8 81 6 3 3 10 2 2 0   34 1.48 1.48 81.2 -1.33 -0.39 19.0 84 12 4 6 8 1 1 0   35 1.89 1.89 37.9 -1.23 -0.49 8.9 83 1 2 4 2 3 0 0  DG 67 N DT 68 N DC 101 T DC 102 T DC 103 T 36 2.12 2.30 55.5 -1.45 -0.39 13.8 91 3 2 8 2 2 0 0  DT 56 N DG 66 N DG 67 N DT 68 N DT 104 T DT 105 T 37 1.74 1.92 72.7 -1.27 -0.31 17.4 82 3 4 5 5 4 0 0  DT 68 N 38 1.58 1.77 73.3 -1.52 -0.33 16.3 79 6 3 6 4 4 2 0  DA 60 N DG 67 N DT 68 N DC 101 T DC 102 T DC 103 T 39 1.33 1.33 32.9 -1.66 -0.26 22.6 84 5 4 1 2 1 0 0   40 1.45 2.65 30.4 -1.62 -0.49 22.4 84 2 5 1 4 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.