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PDBsum entry 5emq

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 5emq calculated with MOLE 2.0 PDB id
5emq
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.40 2.43 27.8 -1.44 -0.40 13.9 74 3 0 2 1 2 2 0  DA 6 C DG 10 C DA 11 C DC 11 D DA 12 D DT 15 D
2 2.02 2.19 28.4 -1.34 -0.35 11.1 77 4 0 3 1 2 2 0  DA 6 C DA 11 C DC 11 D DA 12 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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