spacer
spacer

PDBsum entry 5ejs

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 5ejs calculated with MOLE 2.0 PDB id
5ejs
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.50 1.71 25.4 -2.92 -0.81 35.5 78 4 5 2 0 2 0 0  
2 2.38 2.38 40.9 -2.39 -0.64 18.5 82 3 2 8 3 0 1 1  
3 1.65 1.83 46.6 -1.85 -0.57 17.1 82 5 4 6 3 0 4 1  
4 1.24 1.23 60.6 -1.17 -0.39 18.5 82 6 8 6 5 6 2 0  
5 2.35 4.23 62.0 -2.71 -0.78 29.0 84 8 9 8 1 0 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer