PDBsum entry 5e6j Go to PDB code:  Tunnel analysis for: 5e6j calculated with MOLE 2.0 PDB id 5e6j Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 2.25 26.7 -1.32 -0.50 18.0 89 2 3 3 1 2 0 0   2 1.19 2.19 34.8 -1.04 -0.58 13.9 92 2 4 5 1 2 0 0   3 1.18 2.30 36.6 -1.30 -0.65 13.4 89 3 3 5 0 2 0 0   4 1.24 2.29 59.2 -1.95 -0.63 20.0 85 4 7 4 1 2 2 0   5 1.18 2.13 60.9 -2.11 -0.68 20.2 88 4 6 6 1 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.