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PDBsum entry 5e3h
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Pore analysis for: 5e3h calculated with  MOLE 2.0
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PDB id
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5e3h
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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7 pores,
coloured by radius |
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7 pores,
coloured by radius
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7 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.09 |
2.09 |
29.1 |
-2.00 |
-0.63 |
17.4 |
84 |
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3 |
2 |
5 |
0 |
1 |
0 |
1 |
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A 3 B G 14 C
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2 |
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2.09 |
2.09 |
38.7 |
-2.10 |
-0.63 |
18.3 |
83 |
4 |
3 |
7 |
0 |
1 |
0 |
1 |
A 3 B C 4 B G 14 C
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3 |
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1.56 |
1.58 |
58.4 |
-0.24 |
-0.31 |
10.0 |
82 |
2 |
3 |
0 |
5 |
1 |
0 |
0 |
C 10 B G 11 B C 6 C
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4 |
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2.39 |
2.63 |
78.8 |
-1.54 |
-0.64 |
17.0 |
81 |
7 |
4 |
4 |
2 |
1 |
0 |
0 |
C 4 B C 10 B G 11 B G 5 C C 6 C U 7 C A 8 C G 9 C
C 10 C
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5 |
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2.08 |
2.16 |
83.1 |
-1.78 |
-0.53 |
19.8 |
85 |
5 |
7 |
6 |
2 |
0 |
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1 |
A 3 B C 4 B U 12 B A 3 C C 4 C G 5 C G 14 C
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6 |
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1.58 |
1.59 |
95.8 |
-1.07 |
-0.54 |
16.8 |
84 |
8 |
6 |
4 |
8 |
0 |
0 |
0 |
C 4 B G 5 C C 6 C U 7 C A 8 C G 9 C C 10 C
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7 |
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1.54 |
1.60 |
127.8 |
-1.06 |
-0.52 |
19.5 |
85 |
8 |
8 |
2 |
9 |
0 |
0 |
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C 4 B C 6 B U 7 B A 8 B G 9 B C 10 B A 3 C C 4 C
G 5 C C 6 C U 7 C A 8 C G 9 C C 10 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program