PDBsum entry 5e3h Go to PDB code:  Tunnel analysis for: 5e3h calculated with MOLE 2.0 PDB id 5e3h Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 3.47 35.5 0.46 0.23 12.5 80 4 0 1 9 1 1 1   2 1.12 3.31 37.9 -0.24 -0.22 14.1 84 3 2 0 7 2 0 0  MG 1003 A ADP 1006 A BEF 1007 A 3 1.12 3.44 41.1 -0.21 -0.22 12.2 86 2 4 1 9 1 1 0  MG 1003 A ADP 1006 A BEF 1007 A 4 1.14 3.26 47.9 -0.26 -0.12 12.1 83 5 3 2 10 2 0 0  A 8 B G 9 B 5 1.14 3.35 51.5 -0.60 -0.23 11.3 85 4 1 4 8 2 0 0  C 6 B U 7 B A 8 B G 9 B C 10 B G 9 C 6 1.13 1.13 20.4 -1.65 -0.62 21.6 77 2 2 1 2 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.