PDBsum entry 5e1j Go to PDB code:  Pore analysis for: 5e1j calculated with MOLE 2.0 PDB id 5e1j Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.53 2.54 25.3 2.75 1.02 2.3 67 1 0 1 6 4 0 1   2 2.47 3.82 28.3 -1.65 -0.31 25.2 81 3 3 2 3 1 1 0   3 1.76 3.76 33.8 -1.38 -0.21 24.5 63 2 1 0 2 2 1 0   4 1.40 2.17 34.3 -0.32 -0.12 18.7 71 3 2 0 3 2 0 0   5 2.48 3.82 34.9 -1.37 -0.40 21.1 80 2 4 2 3 2 1 0   6 1.77 3.77 38.4 -0.84 0.18 24.0 71 2 2 1 2 2 1 0   7 1.47 1.50 38.6 1.05 0.34 10.5 69 2 3 0 7 3 1 2   8 1.30 1.39 52.2 0.01 0.43 19.7 71 5 3 0 7 4 1 0   9 1.31 1.39 60.8 0.05 0.44 19.6 73 5 3 0 9 5 1 0   10 1.32 1.44 83.7 -0.26 -0.02 10.9 70 1 5 3 6 6 2 0   11 1.35 1.49 25.7 -0.59 -0.10 16.6 84 1 3 1 4 1 0 0   12 1.14 1.22 28.2 -0.54 -0.09 15.8 85 0 3 1 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.