PDBsum entry 5dmx Go to PDB code:  Pore analysis for: 5dmx calculated with MOLE 2.0 PDB id 5dmx Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.20 1.23 28.6 -1.70 -0.67 17.2 82 2 3 3 1 1 1 0   2 3.14 4.79 38.0 -2.34 -0.57 19.2 85 3 5 7 1 2 0 0   3 1.85 1.87 39.6 -1.80 -0.43 21.5 81 2 3 2 2 2 0 0   4 4.21 5.83 39.9 -1.73 -0.49 19.4 73 3 4 4 2 2 1 0   5 1.74 2.38 51.5 -1.90 -0.39 17.7 80 4 5 5 4 2 2 0   6 1.18 2.04 54.0 -1.91 -0.46 22.0 74 5 5 4 3 3 1 0   7 1.19 2.04 55.0 -1.48 -0.24 15.5 75 5 4 4 4 3 3 0   8 1.84 1.86 79.5 -2.00 -0.54 18.9 85 4 6 9 3 3 0 0   9 3.65 5.18 83.8 -1.48 -0.38 20.1 82 4 7 5 6 2 3 0   10 1.32 2.13 93.5 -0.86 -0.40 10.0 84 4 5 10 7 2 0 0   11 3.71 5.20 95.5 -1.75 -0.36 21.5 81 7 8 5 7 2 2 0   12 1.92 2.23 100.5 -2.01 -0.43 23.9 77 6 9 5 5 2 2 0   13 1.19 1.21 53.4 -0.61 -0.33 10.8 85 3 3 5 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.