PDBsum entry 5dkh Go to PDB code:  Pore analysis for: 5dkh calculated with MOLE 2.0 PDB id 5dkh Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.57 2.59 27.8 -1.46 -0.35 18.2 87 3 4 9 3 3 2 0   2 2.39 3.32 36.9 -1.82 -0.55 15.1 92 4 2 11 2 1 2 0   3 2.13 3.13 39.5 -1.53 -0.40 11.6 90 5 2 10 3 3 1 0   4 2.38 3.43 39.7 -2.17 -0.70 17.0 90 5 3 11 1 1 2 0   5 3.31 3.51 43.3 -1.20 -0.54 14.0 86 3 4 8 1 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.