PDBsum entry 5dkh Go to PDB code:  Tunnel analysis for: 5dkh calculated with MOLE 2.0 PDB id 5dkh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.53 1.53 17.2 -0.62 -0.27 5.5 94 2 0 5 5 1 1 0   2 1.53 1.53 20.0 -1.69 -0.65 13.7 90 3 1 5 3 1 1 0   3 1.30 1.61 22.6 0.84 0.50 4.3 75 1 2 3 7 2 1 0  5C0 1503 A 4 1.52 1.53 27.3 -1.95 -0.51 22.3 89 4 4 8 4 2 1 0   5 1.53 1.52 29.0 -1.51 -0.37 18.5 87 3 4 7 6 3 1 0   6 1.53 1.53 30.6 -2.70 -0.58 22.1 89 5 2 8 3 1 0 0   7 1.52 1.52 33.7 -2.30 -0.67 19.5 91 3 2 9 3 1 1 0   8 1.53 1.53 40.7 -1.61 -0.45 13.0 89 5 2 8 5 3 0 0   9 1.53 1.52 46.2 -1.36 -0.31 14.8 91 6 3 10 7 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.