PDBsum entry 5dbb Go to PDB code:  Pore analysis for: 5dbb calculated with MOLE 2.0 PDB id 5dbb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.67 2.72 25.4 -2.42 -0.59 16.6 85 1 2 3 0 1 1 0  DT 7 T DC 8 T 2 3.21 3.38 26.4 -2.58 -0.59 31.1 91 5 1 3 2 1 0 0  DC 5 T DG 6 T DT 7 T 3 2.52 2.60 31.1 -0.54 0.21 17.7 79 4 1 1 1 1 1 0  DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DC 5 T DG 6 T DT 7 T DC 8 T 4 2.48 2.48 38.6 -1.46 -0.18 20.6 83 4 3 1 2 1 1 0  DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DT 7 T DC 8 T 5 2.66 2.95 39.5 -2.61 -0.62 30.7 91 5 3 4 2 0 1 0  DG 4 D DC 5 T DG 6 T 6 2.48 2.48 41.0 -2.53 -0.50 24.7 86 4 3 3 1 1 1 0  DG 1 P DT 3 P DG 4 P DA 5 P DT 6 P DG 7 P DC 8 P DG 9 P DA 10 P DT 7 T DC 8 T DA 14 T DG 15 T DC 16 T 7 1.67 2.26 42.9 -1.17 -0.54 11.5 85 1 3 3 0 1 2 0  DG 4 P DC 8 T DG 9 T 8 3.11 3.34 65.3 -1.48 -0.57 14.5 77 4 2 3 1 2 3 0  DG 4 D DG 4 P DC 5 T DG 6 T DT 7 T DC 8 T DG 9 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.