PDBsum entry 5dbb Go to PDB code:  Tunnel analysis for: 5dbb calculated with MOLE 2.0 PDB id 5dbb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.15 23.9 -0.83 -0.35 16.1 79 2 0 0 2 1 0 0  DG 1 D DT 2 D DC 3 D DG 4 D DG 5 D DA 4 T DC 5 T 2 1.15 1.15 28.1 -1.17 -0.39 17.5 92 3 1 3 3 1 0 0  DG 1 D DT 2 D DC 5 T DG 6 T 3 1.14 1.14 30.1 -0.31 -0.27 11.9 80 3 0 0 3 1 0 0  DG 1 D DT 2 D DC 5 T DG 6 T DT 7 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.