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PDBsum entry 5co0

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Top Page protein dna_rna metals pores links
Pore analysis for: 5co0 calculated with MOLE 2.0 PDB id
5co0
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.38 36.7 -1.79 -0.68 16.9 85 3 1 2 0 1 0 0  DG 8 D DG 9 D DC 10 D DT 11 D DC 12 D
2 1.47 1.48 52.6 -1.94 -0.50 20.9 75 3 2 1 1 2 2 0  DT 2 D DT 3 D DA 4 D DC 5 D DC 6 D DG 7 D DG 8 D
DG 9 D DC 10 D DT 11 D DC 12 D DG 13 E DC 14 E
3 1.45 1.46 60.0 -1.24 -0.46 13.9 83 4 1 2 2 1 1 0  DT 2 D DT 3 D DA 4 D DC 5 D DC 6 D DG 7 D DG 8 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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