PDBsum entry 5c8s Go to PDB code:  Tunnel analysis for: 5c8s calculated with MOLE 2.0 PDB id 5c8s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 2.49 26.6 2.41 0.83 4.1 76 2 0 0 7 2 1 0   2 1.42 1.54 24.5 -1.08 -0.38 16.6 80 2 2 2 3 1 1 1   3 1.92 2.03 16.9 -0.95 -0.26 10.7 85 1 2 1 3 1 1 0   4 1.29 1.29 16.0 -0.19 -0.15 7.8 73 2 0 0 1 2 0 1   5 1.28 1.28 16.5 -0.32 0.16 6.5 73 1 0 1 1 2 0 1   6 1.29 1.29 18.6 -0.82 -0.32 8.8 77 2 0 1 1 2 0 1   7 1.17 1.18 26.5 -0.65 -0.04 13.4 78 3 0 1 3 2 0 1   8 1.15 2.85 30.4 -0.34 -0.19 19.2 89 2 1 1 5 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.