PDBsum entry 5bpb Go to PDB code:  Tunnel analysis for: 5bpb calculated with MOLE 2.0 PDB id 5bpb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 2.39 30.8 0.16 0.06 5.2 72 1 1 1 3 4 2 0   2 1.45 1.46 34.0 0.43 0.21 5.3 65 2 1 2 5 5 3 0   3 1.81 1.93 36.0 0.68 0.22 3.8 69 1 1 2 5 4 3 0   4 2.05 2.12 37.0 0.26 0.03 2.1 70 0 1 2 4 5 4 0   5 1.76 2.48 37.9 -0.05 -0.05 6.0 71 1 1 1 3 6 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.