PDBsum entry 5af4 Go to PDB code:  Tunnel analysis for: 5af4 calculated with MOLE 2.0 PDB id 5af4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.27 35.0 -0.12 -0.06 13.6 82 3 0 1 6 1 0 0  GOL 1076 D GOL 1078 D 2 1.19 1.29 38.3 0.00 -0.07 12.5 78 3 0 1 8 1 0 0  GOL 1076 D GOL 1078 D 3 1.17 1.29 39.4 -0.32 -0.26 12.5 78 5 1 2 5 0 0 0  GOL 1076 D 4 1.13 1.26 39.9 -0.10 -0.21 11.7 76 4 3 1 8 0 0 0  SO4 1078 C GOL 1076 D 5 1.15 1.27 40.6 -0.37 -0.27 13.6 79 4 4 1 6 0 0 0  SO4 1078 C GOL 1076 D 6 1.18 1.32 41.8 -0.22 -0.27 11.7 75 5 1 2 7 0 0 0  GOL 1076 D 7 1.17 1.30 44.1 -0.17 -0.12 10.5 86 2 0 3 8 1 0 0  GOL 1076 D GOL 1078 D 8 1.16 1.28 47.5 -0.09 -0.14 9.4 82 2 0 3 10 1 0 0  GOL 1076 D GOL 1078 D 9 1.20 1.33 48.8 -0.49 -0.30 13.2 82 5 2 5 5 1 0 0  GOL 1076 D 10 1.24 1.37 59.6 -0.74 -0.29 17.1 80 10 2 1 6 0 0 0  GOL 1076 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.