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PDBsum entry 5af4
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Pore analysis for: 5af4 calculated with  MOLE 2.0
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PDB id
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5af4
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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1 pore,
coloured by radius |
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7 pores,
coloured by radius
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7 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.31 |
3.65 |
27.1 |
-2.79 |
-0.64 |
30.0 |
77 |
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4 |
4 |
2 |
1 |
0 |
1 |
0 |
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SO4 1078 C
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2 |
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1.60 |
1.96 |
32.8 |
-0.03 |
0.21 |
15.0 |
88 |
4 |
0 |
3 |
5 |
1 |
0 |
0 |
GOL 1078 D
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3 |
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2.04 |
2.27 |
33.3 |
-0.95 |
-0.04 |
23.0 |
83 |
6 |
1 |
2 |
3 |
1 |
0 |
0 |
GOL 1076 B GOL 1077 B
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4 |
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1.73 |
2.69 |
33.5 |
-1.21 |
-0.22 |
16.9 |
83 |
5 |
1 |
3 |
2 |
2 |
0 |
0 |
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5 |
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1.74 |
3.03 |
40.5 |
-1.76 |
-0.54 |
17.4 |
85 |
5 |
1 |
6 |
2 |
1 |
0 |
0 |
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6 |
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1.55 |
1.61 |
41.9 |
-0.44 |
-0.08 |
13.5 |
85 |
6 |
1 |
4 |
3 |
2 |
0 |
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GOL 1077 B
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7 |
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1.17 |
1.22 |
64.3 |
-0.39 |
-0.08 |
19.1 |
84 |
8 |
2 |
0 |
6 |
0 |
0 |
0 |
SO4 1077 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program