PDBsum entry 5a8h

Pore analysis for: 5a8h calculated with

MOLE 2.0

PDB id

5a8h

Pores calculated on whole structure

Pores calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

17 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.19

1.27

36.2

-0.98

-0.32

5.0

80

0

1

7

3

4

1

0

NAG 588 M

2

2.14

2.27

79.5

-1.92

-0.50

24.2

84

8

4

5

3

0

0

0

3

1.26

1.42

174.1

-1.04

-0.21

17.3

78

9

7

11

7

5

3

2

NAG 762 M NAG 948 M

4

1.02

1.12

211.3

-0.97

-0.27

15.7

83

12

4

11

11

4

3

1

5

1.23

1.41

240.6

-1.31

-0.37

18.8

81

11

10

12

4

4

4

2

NAG 762 A NAG 948 A

6

3.05

3.05

25.4

-1.57

-0.65

16.8

75

1

3

0

1

0

2

0

7

1.09

1.17

104.9

-1.68

-0.55

17.0

88

6

7

8

4

0

4

0

8

0.99

1.26

169.4

-0.94

-0.30

14.2

82

8

6

9

8

3

3

1

9

1.30

1.93

26.7

-0.88

-0.22

14.5

81

2

2

3

1

2

1

0

10

1.21

1.50

35.4

-0.18

-0.36

3.0

88

0

1

4

2

1

2

0

11

1.25

1.97

36.6

-1.19

-0.24

17.7

84

2

2

3

2

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.