PDBsum entry 4ypr Go to PDB code:  Tunnel analysis for: 4ypr calculated with MOLE 2.0 PDB id 4ypr Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.43 32.4 -1.41 -0.54 15.0 87 3 2 4 3 1 0 0  DG 19 E DT 20 E DC 21 E DT 22 E DA 4 F DC 5 F 2 1.33 1.44 37.1 -1.28 -0.63 13.2 84 4 2 4 2 1 0 0  DG 19 E DT 20 E DC 21 E DT 22 E DG 3 F DA 4 F DC 5 F 3 1.32 1.46 41.0 -1.40 -0.56 13.6 83 4 2 3 2 1 1 0  DG 19 E DT 20 E DC 21 E DT 22 E DA 4 F DC 5 F 4 1.33 1.53 52.1 -0.80 -0.27 10.6 79 4 0 3 4 4 0 0  DG 13 E DG 19 E DT 20 E DA 4 F DC 5 F 8OG 6 F DT 7 F DG 8 F 5 1.32 1.55 54.3 -0.68 -0.30 6.8 79 2 0 3 3 5 0 0  DG 19 E DT 20 E DA 4 F DC 5 F 8OG 6 F DT 7 F DG 8 F DG 9 F 6 1.16 1.93 15.7 2.71 1.03 0.7 65 0 0 1 5 4 0 0   7 1.21 2.97 19.6 2.57 0.77 2.9 63 1 1 0 7 2 0 4  SF4 400 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.