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PDBsum entry 4ymj
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Tunnel analysis for: 4ymj calculated with  MOLE 2.0
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PDB id
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4ymj
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.29 |
1.29 |
15.5 |
-0.38 |
0.37 |
6.9 |
71 |
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1 |
0 |
1 |
4 |
2 |
0 |
0 |
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2 |
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1.25 |
1.25 |
16.7 |
-0.51 |
0.26 |
8.6 |
69 |
1 |
0 |
1 |
2 |
2 |
0 |
0 |
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3 |
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1.41 |
1.41 |
16.9 |
0.47 |
-0.13 |
3.6 |
70 |
1 |
0 |
1 |
3 |
3 |
0 |
0 |
GOL 902 B GOL 904 B
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4 |
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1.99 |
3.01 |
19.0 |
2.42 |
0.79 |
4.2 |
76 |
2 |
1 |
0 |
6 |
2 |
0 |
0 |
4EJ 901 B GOL 902 B
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5 |
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1.95 |
2.19 |
20.7 |
-1.61 |
-0.26 |
30.3 |
77 |
4 |
3 |
0 |
2 |
2 |
0 |
0 |
GOL 902 B GOL 904 B
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6 |
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1.96 |
2.17 |
23.7 |
-1.09 |
-0.22 |
25.4 |
79 |
3 |
3 |
0 |
3 |
3 |
0 |
0 |
GOL 902 B GOL 904 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program