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PDBsum entry 4xqk

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 4xqk calculated with MOLE 2.0 PDB id
4xqk
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 27 pores, coloured by radius 27 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.25 1.52 29.3 -1.61 -0.62 13.5 86 2 2 9 2 3 1 0  
2 1.30 1.30 39.9 -1.12 -0.39 15.1 83 6 3 6 3 0 0 0  
3 2.04 3.35 57.1 -1.05 -0.51 12.8 91 3 4 6 5 1 1 0  
4 1.55 2.67 64.1 -1.26 -0.40 11.5 84 5 1 6 5 1 2 0  
5 1.57 2.96 68.7 -1.06 -0.39 10.3 88 3 2 8 5 0 3 0  
6 2.04 3.36 82.8 -0.64 -0.49 11.6 95 2 5 5 7 0 1 0  DA 26 C DG 27 C DG 7 D DC 8 D
7 1.32 1.21 85.2 -1.88 -0.51 20.6 85 9 7 10 5 2 2 0  DA 26 C DG 27 C DG 7 D
8 1.54 1.60 85.5 -2.27 -0.67 21.1 87 5 6 11 3 0 3 0  
9 1.85 3.02 112.0 -1.94 -0.65 21.6 88 9 6 8 6 0 3 0  DT 14 E DC 15 E DT 16 E DT 12 F DA 13 F DG 14 F
DT 17 F
10 1.29 1.48 131.4 -1.45 -0.49 19.8 84 12 8 5 14 1 2 0  DG 25 C DA 26 C DG 27 C DG 7 D DG 1 F
11 1.85 1.85 129.8 -1.78 -0.64 18.4 88 8 10 11 4 0 3 0  DT 5 C DC 6 C DC 22 D DG 23 D DT 27 D DG 28 D
12 1.34 2.34 133.3 -2.23 -0.63 24.0 84 15 10 14 5 0 4 0  
13 1.29 1.41 132.3 -1.87 -0.69 20.3 87 12 8 8 3 0 3 0  DC 3 E DC 4 E DT 5 E DC 6 E DT 14 E DC 15 E DT 12
F DA 13 F DG 14 F DC 22 F DG 23 F
14 1.56 2.74 135.0 -1.23 -0.52 15.7 85 8 10 9 6 0 5 0  
15 1.23 1.35 152.2 -2.11 -0.63 23.1 87 17 9 11 3 0 2 0  DC 3 E DC 4 E DT 5 E DC 6 E DT 14 E DC 15 E DT 16
E DT 17 F DC 22 F DG 23 F
16 1.58 2.98 154.1 -1.44 -0.48 16.1 85 11 7 11 6 0 5 0  DT 5 C DC 6 C DC 22 D DG 23 D DT 27 D DG 28 D
17 1.65 1.69 153.5 -1.95 -0.70 21.7 85 13 8 8 4 0 4 0  DT 14 E DC 15 E DT 16 E DT 9 F DT 12 F DA 13 F DG
14 F DT 17 F
18 1.57 1.60 160.6 -1.04 -0.61 12.8 89 9 7 7 9 0 1 0  DA 26 C DG 27 C DC 28 C DG 1 D DG 7 D DA 26 E DG
27 E DC 28 E DG 1 F
19 1.82 2.60 161.8 -1.38 -0.62 14.3 88 9 7 12 12 0 3 0  DA 26 C DG 27 C DC 28 C DG 1 D DG 7 D DA 26 E DG
27 E DC 28 E DG 1 F
20 1.33 2.29 201.3 -2.03 -0.65 23.9 83 23 12 11 6 0 5 0  DT 14 E DC 15 E DT 16 E DT 9 F DT 12 F DA 13 F DG
14 F DT 17 F
21 2.41 2.52 214.3 -1.38 -0.68 17.1 86 17 9 6 11 0 4 0  DA 26 C DG 27 C DC 28 C DG 1 D DT 14 E DC 15 E DT
16 E DA 26 E DG 27 E DC 28 E DG 1 F DT 12 F DA 13
F DG 14 F DT 17 F
22 1.28 1.53 226.4 -0.79 -0.40 16.1 82 7 13 7 12 5 5 0  DC 22 C DT 23 C DA 24 C DG 25 C DA 26 C DG 27 C
DG 7 D DC 8 D DT 9 D DA 10 D DA 11 D DT 12 D DA
13 D DG 14 D DA 15 D DC 16 D
23 1.18 1.47 253.3 -1.79 -0.57 20.4 84 19 16 16 12 3 3 0  DT 5 C DC 6 C DA 12 C DG 13 C DT 14 C DC 22 C DT
23 C DA 24 C DG 25 C DT 9 D DA 10 D DA 11 D DT 12
D DC 22 D DG 23 D DT 27 D DG 28 D
24 1.10 1.96 257.0 -0.87 -0.38 16.2 81 14 16 10 16 6 7 0  DT 14 C DC 15 C DA 11 D DT 12 D DA 13 D DG 14 D D
A 15 D DC 16 D
25 1.53 1.62 266.9 -1.37 -0.66 16.1 87 14 16 10 12 2 1 0  DA 12 C DG 13 C DT 14 C DC 22 C DT 23 C DA 24 C
DG 25 C DA 26 C DG 1 D DT 9 D DA 10 D DA 11 D DT
12 D DA 26 E DG 27 E DC 28 E
26 1.38 1.54 302.6 -1.70 -0.65 17.6 86 18 14 20 12 2 4 0  DT 5 C DC 6 C DA 12 C DG 13 C DT 14 C DC 22 C DT
23 C DA 24 C DG 25 C DA 26 C DG 1 D DT 9 D DA 10
D DA 11 D DT 12 D DC 22 D DG 23 D DT 27 D DG 28 D
DA 26 E DG 27 E DC 28 E
27 1.26 3.81 306.5 -0.90 -0.41 16.7 82 13 22 15 19 7 7 0  DT 14 C DC 15 C DA 11 D DT 12 D DA 13 D DG 14 D D
A 15 D DC 16 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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