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PDBsum entry 4ui2

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protein ligands Protein-protein interface(s) links
Signaling protein PDB id
4ui2

 

 

 

 

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Contents
Protein chains
201 a.a.
104 a.a.
80 a.a.
156 a.a.
Ligands
NAG-NAG-BMA
SRT ×3
ACT
PDB id:
4ui2
Name: Signaling protein
Title: Crystal structure of the ternary rgmb-bmp2-neo1 complex
Structure: Neogenin. Chain: a. Fragment: 5th and 6th fn type 3 like domains. Engineered: yes. Other_details: chain c and chain d is the result of an autocatalytic cleavage between residues asp168 and pro169. Bone morphogenetic protein 2, bmp2. Chain: b. Fragment: c-terminal domain signaling domain.
Source: Homo sapiens. Human. Organism_taxid: 9606. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293t. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: rosetta plyss.
Resolution:
3.15Å     R-factor:   0.198     R-free:   0.236
Authors: E.G.Healey,B.Bishop,J.Elegheert,C.H.Bell,S.Padilla-Parra,C.Siebold
Key ref: E.G.Healey et al. (2015). Repulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein. Nat Struct Biol, 22, 458-465. PubMed id: 25938661 DOI: 10.1038/nsmb.3016
Date:
27-Mar-15     Release date:   06-May-15    
PROCHECK
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 Headers
 References

Protein chain
Pfam   ArchSchema ?
Q92859  (NEO1_HUMAN) -  Neogenin from Homo sapiens
Seq:
Struc:
 
Seq:
Struc:
 
Seq:
Struc:
1461 a.a.
201 a.a.*
Protein chain
Pfam   ArchSchema ?
P12643  (BMP2_HUMAN) -  Bone morphogenetic protein 2 from Homo sapiens
Seq:
Struc:
396 a.a.
104 a.a.
Protein chain
Pfam   ArchSchema ?
Q6NW40  (RGMB_HUMAN) -  Repulsive guidance molecule B from Homo sapiens
Seq:
Struc:
437 a.a.
80 a.a.
Protein chain
Pfam   ArchSchema ?
Q6NW40  (RGMB_HUMAN) -  Repulsive guidance molecule B from Homo sapiens
Seq:
Struc:
437 a.a.
156 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 3 residue positions (black crosses)

 

 
DOI no: 10.1038/nsmb.3016 Nat Struct Biol 22:458-465 (2015)
PubMed id: 25938661  
 
 
Repulsive guidance molecule is a structural bridge between neogenin and bone morphogenetic protein.
E.G.Healey, B.Bishop, J.Elegheert, C.H.Bell, S.Padilla-Parra, C.Siebold.
 
  ABSTRACT  
 
Repulsive guidance molecules (RGMs) control crucial processes including cell motility, adhesion, immune-cell regulation and systemic iron metabolism. RGMs signal via the neogenin (NEO1) and the bone morphogenetic protein (BMP) pathways. Here, we report crystal structures of the N-terminal domains of all human RGM family members in complex with the BMP ligand BMP2, revealing a new protein fold and a conserved BMP-binding mode. Our structural and functional data suggest a pH-linked mechanism for RGM-activated BMP signaling and offer a rationale for RGM mutations causing juvenile hemochromatosis. We also determined the crystal structure of the ternary BMP2-RGM-NEO1 complex, which, along with solution scattering and live-cell super-resolution fluorescence microscopy, indicates BMP-induced clustering of the RGM-NEO1 complex. Our results show how RGM acts as the central hub that links BMP and NEO1 and physically connects these fundamental signaling pathways.
 

 

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