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PDBsum entry 4s0h

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4s0h calculated with MOLE 2.0 PDB id
4s0h
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.29 4.80 30.5 -2.27 -0.50 26.0 77 5 2 2 2 2 1 0  DT 11 G DT 12 G DG 13 G DG 11 H
2 2.26 2.46 50.0 -1.96 -0.42 18.5 70 8 1 1 0 3 4 0  DA 5 G DG 11 H
3 2.30 2.40 65.3 -1.23 -0.43 12.7 74 6 1 3 3 2 5 0  DT 1 C DC 2 C DT 3 C
4 2.68 2.66 66.5 -1.94 -0.53 19.8 78 10 4 5 3 2 3 0  DT 11 C DT 12 C DT 11 G DT 12 G DG 13 G
5 2.39 2.43 67.3 -1.77 -0.48 16.5 74 9 2 4 2 3 6 0  DT 11 C DT 12 C
6 3.38 4.64 74.4 -1.42 -0.23 16.4 77 7 2 5 1 2 3 0  DT 11 C DT 12 C DG 11 D DA 5 G DG 11 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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