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PDBsum entry 4s0h

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 4s0h calculated with MOLE 2.0 PDB id
4s0h
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.27 2.49 28.3 0.31 0.16 14.1 78 3 3 0 6 1 2 0  
2 1.29 2.26 31.2 0.24 0.19 13.2 77 4 1 0 6 1 3 0  
3 1.49 2.77 34.0 1.01 0.52 12.7 78 3 2 0 10 1 2 0  
4 1.49 2.98 51.2 0.18 0.20 8.9 74 5 1 2 11 5 4 0  DG 11 D
5 1.53 2.59 61.7 -0.12 0.11 12.0 78 9 3 4 12 3 4 0  DT 11 C DT 12 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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