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PDBsum entry 4ppx

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Top Page protein dna_rna metals pores links
Pore analysis for: 4ppx calculated with MOLE 2.0 PDB id
4ppx
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.85 3.78 26.5 -2.59 -0.64 30.9 90 5 1 2 2 0 0 0  DG 4 D DC 5 T SDH 6 T
2 2.83 2.95 29.8 -1.34 -0.34 18.9 84 4 0 1 2 1 0 0  DG 4 D DG 5 D DT 6 P DC 5 T SDH 6 T DG 7 T DC 8 T
3 2.74 2.74 38.4 -2.70 -0.31 29.7 90 4 1 2 2 1 0 0  DT 6 P DC 10 P DC 5 T SDH 6 T DG 7 T DC 8 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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