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PDBsum entry 4ppx
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Tunnel analysis for: 4ppx calculated with  MOLE 2.0
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PDB id
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4ppx
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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3 tunnels,
coloured by
tunnel radius
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3 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
1.21 |
21.1 |
-0.63 |
-0.37 |
13.4 |
85 |
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1 |
0 |
0 |
3 |
1 |
0 |
0 |
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DG 1 D DT 2 D DC 3 D DG 4 D DC 5 T SDH 6 T
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2 |
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1.22 |
1.22 |
32.8 |
-1.86 |
-0.49 |
23.6 |
90 |
4 |
1 |
3 |
2 |
1 |
0 |
0 |
DG 1 D DT 2 D DC 5 T SDH 6 T
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3 |
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1.21 |
1.21 |
37.7 |
-1.10 |
-0.26 |
15.4 |
84 |
3 |
1 |
1 |
3 |
2 |
0 |
0 |
DG 1 D DT 2 D DT 6 P DG 7 P DC 5 T SDH 6 T DG 7 T
DC 8 T
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program