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PDBsum entry 4oi8

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 4oi8 calculated with MOLE 2.0 PDB id
4oi8
Pores calculated on whole structure Pores calculated excluding ligands

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10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.59 2.65 26.3 -1.14 -0.47 12.2 78 2 0 1 3 0 1 0  DG 12 E DG 13 E DC 17 E DT 18 E DT 11 F DT 12 F
DC 13 F
2 2.09 2.12 31.7 -1.23 -0.55 15.7 81 3 0 0 3 0 1 0  DT 20 E DA 21 E DG 22 E DA 23 E DG 7 F DA 8 F DG
9 F
3 2.95 2.98 31.9 -1.83 -0.07 21.5 81 5 0 1 1 1 0 0  DT 8 E DG 9 E DT 10 E DG 12 E DG 13 E DT 11 F DT
12 F DC 13 F DC 14 F DT 15 F DA 22 F
4 2.00 3.37 33.8 -0.71 -0.34 14.3 83 4 1 3 3 0 1 0  DG 13 E DT 20 E DT 11 F DT 12 F
5 2.16 2.16 34.4 -1.44 -0.78 13.2 77 3 1 1 0 0 0 0  DC 17 E DT 18 E DC 19 E DT 20 E DG 9 F DT 10 F DT
11 F DT 12 F DC 13 F
6 1.80 1.80 36.9 -1.19 -0.73 12.7 80 3 0 1 0 0 0 0  DC 17 E DT 18 E DC 19 E DT 20 E DA 21 E DG 22 E
DG 7 F DA 8 F DG 9 F DT 10 F DT 11 F DT 12 F DC
13 F
7 2.43 2.97 37.7 -0.84 -0.10 16.7 81 4 1 0 4 1 0 0  DT 8 E DG 9 E DT 10 E DC 17 E DT 18 E DT 12 F DC
13 F DC 14 F DT 15 F
8 1.97 3.39 54.1 -1.06 -0.22 18.9 82 7 2 2 3 1 2 0  DT 8 E DG 9 E DT 10 E DT 20 E DT 11 F DT 12 F DC
13 F DC 14 F DT 15 F
9 1.80 1.80 58.7 -0.97 -0.48 14.5 85 5 1 4 3 0 2 0  DG 13 E DC 19 E DT 20 E DA 21 E DG 22 E DG 7 F DA
8 F DG 9 F DT 10 F DT 11 F DT 12 F
10 1.80 1.80 67.3 -1.03 -0.33 17.4 82 8 2 2 3 1 2 0  DT 8 E DG 9 E DT 10 E DC 19 E DT 20 E DA 21 E DG
22 E DG 7 F DA 8 F DG 9 F DT 10 F DT 11 F DT 12 F
DC 13 F DC 14 F DT 15 F DA 22 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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