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PDBsum entry 4oi8

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Top Page protein dna_rna Protein-protein interface(s) tunnels links
Tunnel analysis for: 4oi8 calculated with MOLE 2.0 PDB id
4oi8
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.12 2.98 48.2 1.55 0.46 5.3 74 2 1 1 10 3 0 0  DG 13 E DT 11 F DT 12 F
2 1.13 2.98 64.8 0.45 0.10 10.7 79 3 2 3 11 3 1 0  DC 19 E DT 20 E DT 11 F DT 12 F
3 1.24 1.26 85.2 0.25 -0.04 10.7 78 5 2 2 11 3 1 0  DC 19 E DT 20 E DA 21 E DG 22 E DA 23 E DA 6 F DG
7 F DA 8 F DG 9 F DT 10 F DT 11 F DT 12 F
4 1.19 1.52 21.6 1.49 0.37 4.5 76 2 0 1 7 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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